September 13 2001 9:00:45.819 AM GENE_CLUSTER Arrange gene expression data into clusters. RANDOM_INITIALIZE Initialize RANDOM_NUMBER with user SEED = 1234567 Enter the name of the data file Data will be read from the file i1039.dat Spatial dimension is 14 Number of data points is 1152 Enter lower and upper number of clusters The program will try to determine the minimum energy of a clustering, for cluster sizes in the range: 1 25 Enter number of different random configurations to check For each number of clusters, the number of distinct initial random configurations to be checked will be 60 Enter the number of energy iterations For each initial random configuration, the number of times the program will recompute the cluster centers, cluster components, and energy is 40 Minimum and maximum data values: 1 -1.8550 1.9900 2 -1.8590 2.0720 3 -3.0840 2.8640 4 -3.2330 2.0280 5 -2.8830 3.1240 6 -3.0850 2.4090 7 -2.8020 4.3610 8 -2.8410 2.1490 9 -2.2110 2.9110 10 -1.2620 1.8150 11 -1.8970 4.4710 12 -2.4380 3.1440 13 -2.8540 2.2760 14 -2.6420 3.6100 Cluster Minimum Maximum Size Energy Energy 1 7659.5112 7659.5112 2 5843.7139 5843.7139 3 5336.6641 5550.6064 4 4928.3936 5207.4375 5 4599.8340 4866.9458 6 4434.5078 4660.8716 7 4303.7085 4471.7925 8 4179.2905 4360.3032 9 4069.4995 4283.4497 10 3981.8015 4173.8950 11 3892.9360 4119.7134 12 3837.0894 4050.6355 13 3767.6912 3931.8015 14 3706.6594 3905.6404 15 3661.3857 3873.7207 16 3595.5061 3807.9585 17 3572.1765 3747.7354 18 3522.6680 3672.2986 19 3462.0281 3637.4409 20 3448.1323 3578.9050 21 3397.6711 3606.9404 22 3372.1685 3527.0942 23 3352.7434 3509.3999 24 3305.5879 3462.7488 25 3283.6509 3428.3230 Energy table: Cluster Energy Size Energy /point Sqrt(E/Pt) 1 7659.5112 6.6489 2.5785 2 5843.7139 5.0727 2.2523 3 5336.6641 4.6325 2.1523 4 4928.3936 4.2781 2.0684 5 4599.8340 3.9929 1.9982 6 4434.5078 3.8494 1.9620 7 4303.7085 3.7359 1.9328 8 4179.2905 3.6279 1.9047 9 4069.4995 3.5326 1.8795 10 3981.8015 3.4564 1.8591 11 3892.9360 3.3793 1.8383 12 3837.0894 3.3308 1.8250 13 3767.6912 3.2706 1.8085 14 3706.6594 3.2176 1.7938 15 3661.3857 3.1783 1.7828 16 3595.5061 3.1211 1.7667 17 3572.1765 3.1008 1.7609 18 3522.6680 3.0579 1.7487 19 3462.0281 3.0052 1.7336 20 3448.1323 2.9932 1.7301 21 3397.6711 2.9494 1.7174 22 3372.1685 2.9272 1.7109 23 3352.7434 2.9104 1.7060 24 3305.5879 2.8694 1.6939 25 3283.6509 2.8504 1.6883 Data is to be normalized. Minimum and maximum data values: 1 -0.2718 0.4553 2 -0.4607 0.5206 3 -0.2247 0.3110 4 -0.2569 0.2665 5 -0.3492 0.5227 6 -0.4019 0.4021 7 -0.3087 0.3834 8 -0.3314 0.4031 9 -0.4773 0.4739 10 -0.3334 0.4060 11 -0.4546 0.4283 12 -0.4592 0.3981 13 -0.4899 0.4206 14 -0.4539 0.4941 Cluster Minimum Maximum Size Energy Energy 1 203.4240 203.4240 2 157.7514 157.7519 3 144.7196 145.7701 4 133.7608 136.5461 5 126.8259 136.3033 6 121.9500 124.9495 7 118.0111 120.3903 8 114.6672 117.6882 9 112.1052 114.5334 10 109.5682 112.4031 11 107.1100 109.9383 12 105.2164 108.3105 13 103.4741 106.2815 14 101.5616 105.5470 15 100.2418 103.2074 16 99.0431 101.7431 17 97.7854 101.3220 18 96.2912 99.0824 19 95.4232 98.8300 20 94.4902 97.2900 21 93.0850 97.1668 22 92.5289 95.5989 23 91.7941 95.1604 24 90.8663 93.4084 25 90.0577 92.7738 Energy table: Cluster Energy Size Energy /point Sqrt(E/Pt) 1 203.4240 0.1766 0.4202 2 157.7514 0.1369 0.3701 3 144.7196 0.1256 0.3544 4 133.7608 0.1161 0.3408 5 126.8259 0.1101 0.3318 6 121.9500 0.1059 0.3254 7 118.0111 0.1024 0.3201 8 114.6672 0.0995 0.3155 9 112.1052 0.0973 0.3120 10 109.5682 0.0951 0.3084 11 107.1100 0.0930 0.3049 12 105.2164 0.0913 0.3022 13 103.4741 0.0898 0.2997 14 101.5616 0.0882 0.2969 15 100.2418 0.0870 0.2950 16 99.0431 0.0860 0.2932 17 97.7854 0.0849 0.2913 18 96.2912 0.0836 0.2891 19 95.4232 0.0828 0.2878 20 94.4902 0.0820 0.2864 21 93.0850 0.0808 0.2843 22 92.5289 0.0803 0.2834 23 91.7941 0.0797 0.2823 24 90.8663 0.0789 0.2809 25 90.0577 0.0782 0.2796 GENE_CLUSTER Normal end of execution.